YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GWT1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.71
Transmembrane Helix	48	68	0.89
Non-Cytoplasmic	69	73	0.85
Transmembrane Helix	74	93	0.90
Cytoplasmic	94	122	0.94
Transmembrane Helix	123	143	0.81
Non-Cytoplasmic	144	154	0.70
Transmembrane Helix	155	174	0.81
Cytoplasmic	175	198	0.81
Transmembrane Helix	199	217	0.59
Non-Cytoplasmic	218	229	0.54
Transmembrane Helix	230	253	0.81
Cytoplasmic	254	254	0.41
Transmembrane Helix	255	279	0.58
Non-Cytoplasmic	280	299	0.51
Transmembrane Helix	300	324	0.83
Cytoplasmic	325	346	0.52
Transmembrane Helix	347	370	0.72
Non-Cytoplasmic	371	387	0.49
Transmembrane Helix	388	410	0.73
Cytoplasmic	411	427	0.59
Transmembrane Helix	428	448	0.82
Non-Cytoplasmic	449	456	0.60
Transmembrane Helix	457	476	0.93
Cytoplasmic	477	485	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLKQLKE QFVSDLTGGT IEEIYAVTSI ALSSYLSFRL LKKSLGDLAL IYDYILNVLT  60
   61 ILASITVYSN SPSYLHYFIV IPSLVIYLVN YHVEKPSSPH RQNDTKEDKS DELLPRKQFI 120
  121 TAYRSQMLII TNLAILAVDF PIFPRRFAKV ETWGTSMMDL GVGSFVFSMG LANSRQLIKN 180
  181 HTDNYKFSWK SYLKTIKQNF IKSVPILVLG AIRFVSVKQL DYQEHETEYG IHWNFFFTLG 240
  241 FLPIVLGILD PVLNLVPRFI IGIGISIGYE VALNKTGLLK FILSSENRLE SLIAMNKEGI 300
  301 FSFIGYLCIF IIGQSFGSFV LTGYKTKNNL ITISKIRISK KQHKKESSSF FSVATTQGLY 360
  361 LACIFYHLAF SLFISNLSFL QPISRRLANF PYVMWVVSYN ATFLLCYDLI EKFIPGNLTS 420
  421 TVLDSINNNG LFIFLVSNLL TGFINMSINT LETSNKMAVI ILIGYSLTWT LLALYLDKRK 480
  481 IYIKL