YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GUDP_PSEPU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.81
Transmembrane Helix	9	29	0.83
Non-Cytoplasmic	30	46	0.69
Transmembrane Helix	47	70	0.79
Cytoplasmic	71	78	0.66
Transmembrane Helix	79	98	0.76
Non-Cytoplasmic	99	101	0.55
Transmembrane Helix	102	124	0.74
Cytoplasmic	125	243	0.96
Transmembrane Helix	244	264	0.91
Non-Cytoplasmic	265	278	0.78
Transmembrane Helix	279	300	0.92
Cytoplasmic	301	312	0.83
Transmembrane Helix	313	335	0.82
Non-Cytoplasmic	336	340	0.72
Transmembrane Helix	341	362	0.90
Cytoplasmic	363	376	0.79
Transmembrane Helix	377	399	0.89
Non-Cytoplasmic	400	409	0.69
Transmembrane Helix	410	425	0.82
Cytoplasmic	426	456	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEPKQTRVR YLILLMLFLV TTINYADRAT ISIAGSSIQK DFGLDAVTLG YIFSAFGWAY  60
   61 VLGQIPGGWL LDRFGSKKVY AGSIFTWSLF TLLQGYIGEF GISTAVVLLF LLRFMVGLAE 120
  121 APSFPGNARI VASWFPTKER GTASAIFNSA QYFATRAVRA LDGLDRLHLR LAARVHRHGR 180
  181 PGHCVLAHLV DGDLRAERSP AGYAAEVRSS PHGGLVDLED SKDKKDGGPK WDYIRQLLTN 240
  241 RMMMGIYLGQ FCINALTYFF LTWFPVYLVQ ERGMTILKAG IIASLPAICG FLGGVLGGVI 300
  301 SDTLLRRGNS LSVARKTPIV CGMVLSMSMI ICNYVDADWM VVCFMALAFF GKAIGALGWA 360
  361 VVSDTSPKQI AGLSGGLFNT FGNLSSISTP IIIGYIIAAT GVSKWRWSSW VPTHSFAAIS 420
  421 YLFIVGEINR IELKGVTDEP ATTAHPGELL PTTRKV