YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GUB_NICPL
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSHKHIAL QMAAIILLGL LVSSTEIVGA QSVGVCYGML GNNLPPASQV VQLYKSKNIR  60
   61 RMRLYDPNQA ALQALRGSNI EVMLGVPNSD LQNIAANPSN ANNWVQRNVR NFWPAVKFRY 120
  121 IAVGNEVSPV TGTSSLTRYL LPAMRNIRNA ISSAGLQNNI KVSSSVDMTL IGNSFPPSQG 180
  181 SFRNDVRSFI DPIIGFVRRI NSPLLVNIYP YFSYAGNPRD ISLPYALFTA PNVVVQDGSL 240
  241 GYRNLFDAMS DAVYAALSRA GGGSIEIVVS ESGWPSAGAF AATTNNAATY YKNLIQHVKR 300
  301 GSPRRPNKVI ETYLFAMFDE NNKNPELEKH FGLFSPNKQP KYPLSFGFSD RYWDISAENN 360
  361 ATAASLISEM

Type	Start	End	Confidence
Signal Peptide	1	30	0.95
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	370	0.99