YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR3_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.87
Transmembrane Helix	9	27	0.92
Non-Cytoplasmic	28	63	0.93
Transmembrane Helix	64	86	0.91
Cytoplasmic	87	94	0.87
Transmembrane Helix	95	115	0.93
Non-Cytoplasmic	116	121	0.84
Transmembrane Helix	122	143	0.95
Cytoplasmic	144	154	0.83
Transmembrane Helix	155	175	0.93
Non-Cytoplasmic	176	182	0.87
Transmembrane Helix	183	206	0.90
Cytoplasmic	207	270	0.98
Transmembrane Helix	271	292	0.62
Non-Cytoplasmic	293	305	0.57
Transmembrane Helix	306	327	0.92
Cytoplasmic	328	334	0.66
Transmembrane Helix	335	356	0.94
Non-Cytoplasmic	357	363	0.62
Transmembrane Helix	364	388	0.86
Cytoplasmic	389	398	0.64
Transmembrane Helix	399	419	0.83
Non-Cytoplasmic	420	426	0.62
Transmembrane Helix	427	447	0.94
Cytoplasmic	448	496	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKKKITAS LIYAVSVAAI GSLQFGYNTG VINAPEKIIQ AFYNRTLSQR SGETISPELL  60
   61 TSLWSLSVAI FSVGGMIGSF SVSLFFNRFG RRNSMLLVNV LAFAGGALMA LSKIAKAVEM 120
  121 LIIGRFIIGL FCGLCTGFVP MYISEVSPTS LRGAFGTLNQ LGIVVGILVA QIFGLEGIMG 180
  181 TEALWPLLLG FTIVPAVLQC VALLFCPESP RFLLINKMEE EKAQTVLQKL RGTQDVSQDI 240
  241 SEMKEESAKM SQEKKATVLE LFRSPNYRQP IIISITLQLS QQLSGINAVF YYSTGIFERA 300
  301 GITQPVYATI GAGVVNTVFT VVSLFLVERA GRRTLHLVGL GGMAVCAAVM TIALALKEKW 360
  361 IRYISIVATF GFVALFEIGP GPIPWFIVAE LFSQGPRPAA MAVAGCSNWT SNFLVGMLFP 420
  421 YAEKLCGPYV FLIFLVFLLI FFIFTYFKVP ETKGRTFEDI SRGFEEQVET SSPSSPPIEK 480
  481 NPMVEMNSIE PDKEVA