YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR3_CANLF
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	26	0.90
Non-Cytoplasmic	27	61	0.95
Transmembrane Helix	62	85	0.90
Cytoplasmic	86	93	0.88
Transmembrane Helix	94	114	0.94
Non-Cytoplasmic	115	120	0.81
Transmembrane Helix	121	143	0.92
Cytoplasmic	144	153	0.85
Transmembrane Helix	154	174	0.92
Non-Cytoplasmic	175	183	0.78
Transmembrane Helix	184	206	0.89
Cytoplasmic	207	269	0.98
Transmembrane Helix	270	291	0.89
Non-Cytoplasmic	292	304	0.86
Transmembrane Helix	305	326	0.94
Cytoplasmic	327	333	0.90
Transmembrane Helix	334	355	0.93
Non-Cytoplasmic	356	360	0.89
Transmembrane Helix	361	388	0.79
Cytoplasmic	389	399	0.84
Transmembrane Helix	400	420	0.90
Non-Cytoplasmic	421	426	0.71
Transmembrane Helix	427	448	0.93
Cytoplasmic	449	495	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTQKVTVSL IFALSIATIG SFQFGYNTGV INAPETIIKD FLNYTLEEKS ENLPTEVLLT  60
   61 SLWSLSVAIF SVGGMIGSFS VGLFVNRFGR RNSMLMVNLL AVAGGCLMGF CKIAQSVEML 120
  121 ILGRLIIGLF CGLCTGFVPM YIGEISPTAL RGAFGTLNQL GIVIGILVAQ IFGLKVIMGT 180
  181 EELWPLLLGF TIIPAVLQSA ALPFCPESPR FLLINRKEEE NAKEILQRLW GTQDVSQDIQ 240
  241 EMKDESARMA QEKQVTVLEL FRSRSYRQPI IISIMLQLSQ QLSGINAVFY YSTGIFKDAG 300
  301 VEEPIYATIG AGVVNTIFTV VSLFLVERAG RRTLHMIGLG GMAVCSILMT ISLLLKDNYN 360
  361 WMSFVCIGAI LVFVAFFEIG PGPIPWFIVA ELFSQGPRPA AMAVAGCSNW TSNFLVGLLF 420
  421 PSAAFYLGAY VFIIFTGFLI VFLVFTFFKV PETRGRTFEE ITRAFEGQGQ DANRAEKGPI 480
  481 VEMNSMQPVK ETATV