YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR1_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.97
Transmembrane Helix	8	28	0.89
Non-Cytoplasmic	29	63	0.93
Transmembrane Helix	64	87	0.89
Cytoplasmic	88	95	0.87
Transmembrane Helix	96	116	0.92
Non-Cytoplasmic	117	122	0.86
Transmembrane Helix	123	145	0.92
Cytoplasmic	146	155	0.83
Transmembrane Helix	156	176	0.92
Non-Cytoplasmic	177	184	0.87
Transmembrane Helix	185	207	0.90
Cytoplasmic	208	271	0.96
Transmembrane Helix	272	293	0.80
Non-Cytoplasmic	294	306	0.81
Transmembrane Helix	307	328	0.89
Cytoplasmic	329	335	0.91
Transmembrane Helix	336	358	0.93
Non-Cytoplasmic	359	366	0.79
Transmembrane Helix	367	391	0.86
Cytoplasmic	392	401	0.85
Transmembrane Helix	402	422	0.91
Non-Cytoplasmic	423	429	0.74
Transmembrane Helix	430	450	0.94
Cytoplasmic	451	492	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSSKKVTG RLMLAVGGAV LGSLQFGYNT GVINAPQKVI EEFYNQTWIH RYGERILPTT  60
   61 LTTLWSLSVA IFSVGGMIGS FSVGLFVNRF GRRNSMLMMN LLAFVSAVLM GFSKLAKSFE 120
  121 MLILGRFIIG VYCGLTTGFV PMYVGEVSPT ALRGALGTLH QLGIVVGILI AQVFGLDSIM 180
  181 GNEDLWPLLL SVIFVPALLQ CIVLPLCPES PRFLLINRNE ENRAKSVLKK LRGNADVTRD 240
  241 LQEMKEESRQ MMREKKVTIL ELFRSPAYRQ PILSAVVLQL SQQLSGINAV FYYSTSIFEK 300
  301 AGVQQPVYAT IGSGIVNTAF TVVSLFVVER AGRRTLHLIG LAGMAACAVL MTIALALLEQ 360
  361 LPWMSYLSIV AIFGFVAFFE VGPGPIPWFI VAELFSQGPR PAAVAVAGFS NWTSNFIVGM 420
  421 CFQYVEQLCG PYVFIIFTVL LVLFFIFTYF KVPETKGRTF DEIASGFRQG GASQSDKTPE 480
  481 ELFHPLGADS QV