YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GSPL_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPESLMVIRS SSTLRKHWEW MTFSADSVSS VHTLTDDLPL ESLADQPGAG NVHLLIPPEG  60
   61 LLYRSLTLPN AKYKLTAQTL QWLAEETLPD NTQDWHWTVV DKQNESVEVI GIQSEKLSRY 120
  121 LERLHTAGLN VTRVLPDGCY LPWEVDSWTL VNQQTSWLIR SAAHAFNELD EHWLQHLAAQ 180
  181 FPPENMLCYG VVPHGVAAAN PLIQHPEIPS LSLYSADIAF QRYDMLHGIF RKQKTVSKSG 240
  241 KWLARLAVSC LVLAILSFVG SRSIALWHTL KIEDQLQQQQ QETWQRYFPQ IKRTHNFRFY 300
  301 FKQQLAQQYP EAVPLLYHLQ TLLLEHPELQ LMEANYSQKQ KSLTLKMSAK SEANIDRFCE 360
  361 LTQSWLPMEK TEKDPVSGVW TVRNSGK

Type	Start	End	Confidence
Cytoplasmic	1	241	0.76
Transmembrane Helix	242	266	0.72
Non-Cytoplasmic	267	387	0.89