YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GSPF_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYRYRAMTQ DGQKLQGIID ANDERQARLR LREEGLFLLD IRPQKSSGVK TRRPRISHSE  60
   61 LTLFTRQLAT LSAAALPLEE SLAVIGQQSS NKRLGDVLNQ VRSAILEGHP LSDALQHFPT 120
  121 LFDSLYRTLV KAGEKSGLLA PVLEKLADYN ENRQKIRSKL IQSLIYPCML TTVAIGVVII 180
  181 LLTAVVPKIT EQFVHMKQQL PLSTRILLGL SDTLQRTGPT LLATVFIVAV GFWLWLKRGN 240
  241 NRHRFHAMLL RVALIGPLIC AINSARYLRT LSILQSSGVP LLDGMNLSTE SLNNLEIRQR 300
  301 LANAAENVRQ GNSIHLSLEQ TAIFPPMMLY MVASGEKSGQ LGTLMVRAAD NQETLQQNRI 360
  361 ALTLSIFEPA LIITMALIVL FIVVSVLQPL LQLNSMIN

Type	Start	End	Confidence
Cytoplasmic	1	162	0.99
Transmembrane Helix	163	186	0.93
Non-Cytoplasmic	187	216	0.95
Transmembrane Helix	217	236	0.96
Cytoplasmic	237	246	0.92
Transmembrane Helix	247	268	0.81
Non-Cytoplasmic	269	365	0.74
Transmembrane Helix	366	391	0.81
Cytoplasmic	392	398	0.59