YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GSPC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTLRFPFHL ANHNKDAAIN ILIIFISIGS IIFNVNYFHT TIVKNGQIIN QPTNAFQSDF  60
   61 SLAALWRNEN HAGVKDANPV AVNQETPKLS IALNGIVLTS NDETSFVLIN EGSEQKRYSL 120
  121 NEALESAPGT FIRKINKTSV VFETHGHYEK VTLHPGLPDI IKQPDSESQN VLADYIIATP 180
  181 IRDGEQIYGL RLNPRKGLNA FTTSLLQPGD IALRINNLSL THPDEVSQAL SLLLTQQSAQ 240
  241 FTIRRNGVPR LINVSVGELT GMNGLRHERT Q

Type	Start	End	Confidence
Cytoplasmic	1	16	0.77
Transmembrane Helix	17	40	0.85
Non-Cytoplasmic	41	271	0.81