YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNRHR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNASLEQD QNHCSAINNS IPLTQGKLPT LTLSGKIRVT VTFFLFLLST AFNASFLVKL  60
   61 QRWTQKRKKG KKLSRMKVLL KHLTLANLLE TLIVMPLDGM WNITVQWYAG EFLCKVLSYL 120
  121 KLFSMYAPAF MMVVISLDRS LAVTQPLAVQ SKSKLERSMT SLAWILSIVF AGPQLYIFRM 180
  181 IYLADGSGPA VFSQCVTHCS FPQWWHEAFY NFFTFSCLFI IPLLIMLICN AKIIFALTRV 240
  241 LHQDPRKLQL NQSKNNIPRA RLRTLKMTVA FGTSFVICWT PYYVLGIWYW FDPEMLNRVS 300
  301 EPVNHFFFLF AFLNPCFDPL IYGYFSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.95
Transmembrane Helix	39	58	0.94
Cytoplasmic	59	77	0.93
Transmembrane Helix	78	100	0.89
Non-Cytoplasmic	101	121	0.85
Transmembrane Helix	122	142	0.85
Cytoplasmic	143	159	0.91
Transmembrane Helix	160	182	0.88
Non-Cytoplasmic	183	211	0.92
Transmembrane Helix	212	231	0.94
Cytoplasmic	232	266	0.89
Transmembrane Helix	267	287	0.91
Non-Cytoplasmic	288	304	0.87
Transmembrane Helix	305	325	0.90
Cytoplasmic	326	327	0.81