YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GHRHR_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.89
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	132	0.97
Transmembrane Helix	133	154	0.92
Cytoplasmic	155	162	0.86
Transmembrane Helix	163	181	0.75
Non-Cytoplasmic	182	206	0.71
Transmembrane Helix	207	230	0.64
Cytoplasmic	231	240	0.81
Transmembrane Helix	241	263	0.92
Non-Cytoplasmic	264	283	0.92
Transmembrane Helix	284	306	0.89
Cytoplasmic	307	367	0.96
Transmembrane Helix	368	386	0.88
Non-Cytoplasmic	387	400	0.71
Transmembrane Helix	401	421	0.90
Cytoplasmic	422	464	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLLWATWV LCLLNLWGVA LGHLHLECDF ITQLRDDELA CLQAAEGTNN SSMGCPGTWD  60
   61 GLLCWPPTGS GQWVSLPCPE FFSHFGSDPG AVKRDCTITG WSDPFPPYPV ACPVPLELLT 120
  121 EEKSYFSTVK IIYTTGHSIS IVALCVAIAI LVALRRLHCP RNYIHTQLFA TFILKASAVF 180
  181 LKDAAVFQGD STDHCSMSTI LCKVSVAVSH FATMTNFSWL LAEAVYLSCL LASTSPRSKP 240
  241 AFWWLVLAGW GLPVLCTGTW VGCKLAFEDT ACWDLDDSSP YWWIIKGPIV LSVGVNFGLF 300
  301 LNIICILLRK LGPAQGGLHT RAQYCNYLLP WSCPLPQVPR ERTDLGPSSH EITVQESGTR 360
  361 NCQLPWRLSK STLLLIPLFG IHYIIFNFLP DSAGLGIRLP LELGLGSFQG FVVAVLYCFL 420
  421 NQEVRTEISR KWYGHDPELL PARRTCTEWT TPPRSRVKVL TSEC