YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPR1_YARLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTEIPDLEK QQIDHNSGSD DPQPIHDDMA PVSRIRSSGP NHEYIHIADQ KFHRDDFYRA  60
   61 FGGTLNPGGA PQPSRKFGNP APLGLSAFAL TTLVFSLCTV QARGVPNPSI AVGLALFYGG 120
  121 VCQFAAGMWE FVQENTFGAA ALTSYGGFWM SWAAIEMNAF GIKDSYNDPI EVQNAVGIYL 180
  181 FGWFIFTLML TLCTLKSTVA FFGLFFMLMM TFLVLACANV TQHHGTAIGG GWLGIITAFF 240
  241 GFYNAYAGLA NPGNSYIVPV PLDMPFVKKD

Type	Start	End	Confidence
Cytoplasmic	1	80	0.80
Transmembrane Helix	81	102	0.85
Non-Cytoplasmic	103	108	0.59
Transmembrane Helix	109	129	0.88
Cytoplasmic	130	135	0.59
Transmembrane Helix	136	155	0.87
Non-Cytoplasmic	156	174	0.61
Transmembrane Helix	175	194	0.90
Cytoplasmic	195	198	0.60
Transmembrane Helix	199	220	0.89
Non-Cytoplasmic	221	227	0.50
Transmembrane Helix	228	247	0.91
Cytoplasmic	248	270	0.65