YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_STRPJ
Protein type:	Globular with Signal Peptide
Type Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKQTVAVLG PGSWGTALSQ VLNDNGHEVR IWGNLPEQIN EINTHHTNKH YFKDVVLDEN  60
   61 IIAYTDLAET LKNVDAILFV VPTKVTRLVA QQVAQTLDHK VIIMHASKGL EPDSHKRLST 120
  121 ILEEEIPEHL RSDIVVVSGP SHAEETIVRD LTLITAASKD LQTAQYVQEL FSNHYFRLYT 180
  181 NTDVIGVETA GALKNIIAVG AGALHGLGFG DNAKAAIIAR GLAEITRLGV ALGASPLTYS 240
  241 GLSGVGDLIV TGTSIHSRNW RAGDALGRGE SLADIEANMG MVIEGISTTR AAYELAQELG 300
  301 VYMPITQAIY QVIYHGTNIK DAIYDIMNNE FKAENEWS

Type	Start	End	Confidence
Signal Peptide	1	19	0.71
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	338	0.97