YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_STRPQ
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQKVAILG PGSWGTALSQ VLNDNGHDVR LWGNIPDQIE EINTKHTNRH YFKDIVLDKN  60
   61 ITATLDLGQA LSDVDAVLFV VPTKVTRLVA RQVAAILDHK VVVMHASKGL EPETHERLST 120
  121 ILEEEIPAHF RSEVVVVSGP SHAEETIVRD ITLITAASKD IEAAKYVQSL FSNHYFRLYT 180
  181 NTDVIGVETA GALKNIIAVG AGALHGLGYG DNAKAAVITR GLAEITRLGV KLGADPLTYS 240
  241 GLSGVGDLIV TGTSVHSRNW RAGAALGRGE KLEDIERNMG MVIEGIATTK VAYEIAQDLG 300
  301 VYMPITTAIY KSIYEGADIK ESILGMMSNE FRSENEWH

Type	Start	End	Confidence
Signal Peptide	1	19	0.88
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	338	0.99