YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_STRMU
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRQKIAVLG PGSWGTALSQ VLNDNGHEVR IWGNIPEQLD EINEHHTNKR YFKDVVLDEK  60
   61 IKAYHDLEDA LKDIDAVLFV VPTKVTRLVA KQVSQILDHK AVVMHASKGL EPGTHERLSV 120
  121 ILEEEIPNHL RSDIVVVSGP SHAEETIVRD ITLITAASKD LEAAKYVQKL FSNNYFRLYT 180
  181 NPDVIGVETA GALKNIIAVG AGALHGMGYG DNAKAAVITR GLAEITRLGV KLGADPLTYS 240
  241 GLSGVGDLIV TGTSIYSRNW RAGDALGRGE KLEDIERNMG MVIEGISTTK VAYELSRELN 300
  301 VYMPITCAIY QSIYEGKNIK EAITSMMSNE FRAENEWSK

Type	Start	End	Confidence
Signal Peptide	1	19	0.89
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	339	0.99