YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_SERMA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTVNASMTV IGAGSYGTAL AITLARNGHS VVLWGHNPAQ IQTLQHDRCN QAFLPDVPFP  60
   61 DTLLLEADLA RALAASRDVL VVVPSHVFGD VLRQLKPHLR PDARIVWATK GLEAETGRLL 120
  121 QNVAREALGE TIPLAVLSGP TFAKELAAGL PTAIALAATD AQFADDLQQG CMHCGKSFRV 180
  181 YSNPDFIGVQ LGGAVKNVIA IGAGMSDGIG FGANARTALI TRGLAEMSRL GSALGADPST 240
  241 FMGMAGLGDL VLTCTDNQSR NRRFGIMLGQ GKGVQEAQDS IGQVVEGYRN TKEVLALAQR 300
  301 QGVEMPITEQ IYQVLYCHKD AREAALSLLG RARKDEKPSV

Type	Start	End	Confidence
Signal Peptide	1	21	0.58
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	340	0.93