YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_OCEIH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVAVLGAG SWGTALAIVL ADNGHEVRLW SHRKEHAETI NETHRNHKYL DVDIPNEITA  60
   61 YSDMHQTVSG VDAVVIVVPT KAIREVCSEL NKWMDSKTTV IHATKGIEPV SLKRVSEMIE 120
  121 EEMDIKYEDI VVLSGPSHAE EVALRHPTTV TTSSINLEKA KHAQDLFSSD SFRVYTSDDI 180
  181 LGIELGGALK NIIALGAGIS DGLGFGDNAK AALITRGLAE IARLGTSLGA NPLSFLGLSG 240
  241 VGDLIVTCTS VHSRNWRAGN LLGKGNQLED VLEQMGMVVE GVRTVKAAHQ FAKDQNVDMP 300
  301 ITSGIFQILF ENKNPKDVVE QLMNRGKRDE MDDLAVLLKE RYSE

Type	Start	End	Confidence
Signal Peptide	1	21	0.93
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	344	0.98