YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_LISIN
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQKKVAILG AGSWGTGLAL VLADNNHKPV IWGNLDKIVN EINESHTNSH YLPDIILPTE  60
   61 VKATLSLDEA IDGAEIVVIA IPTNAMRVVC KQLNEALKEP TILVHVSKGI EPETNLRMSE 120
  121 VIEEEVDATK RKALVVLSGP SHAEEVALRH PTTLCASCKD LKAAEIVQDR FINNNLRIYT 180
  181 NDDVIGAEIG GALKNIIALG AGISDGLGYG DNAKAALMTR GMAEITRLGV AVGSNPQTFY 240
  241 GLTGIGDLIV TCTSVHSRNW RAGNMLGKGE NLDEVLEKMG MVVEGVRTAK AVHGWAKKLD 300
  301 IDMPITESIY AILFENKDAR EAVDLLMGRK KKIEKESF

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	338	0.99