YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_LEPIC
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIGVIGSGS FGTALGSLLA DKGYEVTLWC RNDSQVESIN RNHINNKHLP NFTLPEKLTA  60
   61 SKDLRNVVQG KDMIVSSPPS HALSEVLREI KEYLPEKVPI VSASKGIENG TLRLVSEIFE 120
  121 SELPEKYHSY LSYLSGPSFA KEIIQKVPTI VSIASKNETT ARKVQEIFSF LYFRTYWTPD 180
  181 VIGVEVGGSL KNVIALAAGV SDGLGFGQNT RAALITRGLN EITKIGLKLG ADPMTFLGPS 240
  241 GMGDLILTCC GEQSRNRTVG FRLGKGETLE QILSSMNEVA EGVKTTQSAY ELSQKLGIEM 300
  301 AITNEVYKML YEGKNPREVV KDLMKRDLKR EGVSV

Type	Start	End	Confidence
Signal Peptide	1	20	0.89
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	335	0.99