YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_LACLA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPQKIAVLG PGSWGTALSQ VLNDNGHEVR IWGNNPEQMA EINEKHTNTR YFKDVVLDEK  60
   61 IKAFDRLDLA LEDVDAILFV VPTKVTRLVA KQVAEVLKHK VHILHASKGL EQGTHERIST 120
  121 ILEEEIPAQL RGEIVVVSGP SHAEETIVRD ITLISAASKD HDEAKYAQAI FSNDYFRLYT 180
  181 NTDVIGVETA GALKNIIAVG AGALHGLGFG DNAKAAIITR GLAEITRLGV AMGAEPLTYS 240
  241 GLSGVGDLIV TGTSIHSRNW RAGDALGRGE KLADIEKNMG MVIEGVSTTK AAFELAQQLG 300
  301 IDMPITETIY KVLYENLDAK TGILDIMRRE TRAENEFINN K

Type	Start	End	Confidence
Signal Peptide	1	19	0.75
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	341	0.99