YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNTP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.55
Transmembrane Helix	5	23	0.84
Non-Cytoplasmic	24	28	0.45
Transmembrane Helix	29	50	0.89
Cytoplasmic	51	56	0.51
Transmembrane Helix	57	79	0.82
Non-Cytoplasmic	80	98	0.57
Transmembrane Helix	99	130	0.76
Cytoplasmic	131	136	0.63
Transmembrane Helix	137	157	0.75
Non-Cytoplasmic	158	176	0.82
Transmembrane Helix	177	200	0.90
Cytoplasmic	201	221	0.86
Transmembrane Helix	222	245	0.84
Non-Cytoplasmic	246	260	0.74
Transmembrane Helix	261	283	0.89
Cytoplasmic	284	297	0.80
Transmembrane Helix	298	320	0.85
Non-Cytoplasmic	321	329	0.72
Transmembrane Helix	330	350	0.68
Cytoplasmic	351	351	0.43
Transmembrane Helix	352	376	0.71
Non-Cytoplasmic	377	379	0.43
Transmembrane Helix	380	403	0.73
Cytoplasmic	404	423	0.47
Transmembrane Helix	424	446	0.89
Non-Cytoplasmic	447	447	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVLNILWVV FGIGLMLVLN LKFKINSMVA LLVAALSVGM LAGMDLMSLL HTMKAGFGNT  60
   61 LGELAIIVVF GAVIGKLMVD SGAAHQIAHT LLARLGLRYV QLSVIIIGLI FGLAMFYEVA 120
  121 FIMLAPLVIV IAAEAKIPFL KLAIPAVAAA TTAHSLFPPQ PGPVALVNAY GADMGMVYIY 180
  181 GVLVTIPSVI CAGLILPKFL GNLERPTPSF LKADQPVDMN NLPSFGVSIL VPLIPAIIMI 240
  241 STTIANIWLV KDTPAWEVVN FIGSSPIAMF IAMVVAFVLF GTARGHDMQW VMNAFESAVK 300
  301 SIAMVILIIG AGGVLKQTII DTGIGDTIGM LMSHGNISPY IMAWLITVLI RLATGQGVVS 360
  361 AMTAAGIISA AILDPATGQL VGVNPALLVL ATAAGSNTLT HINDASFWLF KGYFDLSVKD 420
  421 TLKTWGLLEL VNSVVGLIIV LIISMVA