YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLTS_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.62
Transmembrane Helix	6	25	0.69
Cytoplasmic	26	32	0.70
Transmembrane Helix	33	52	0.84
Non-Cytoplasmic	53	68	0.61
Transmembrane Helix	69	87	0.85
Cytoplasmic	88	93	0.60
Transmembrane Helix	94	116	0.88
Non-Cytoplasmic	117	123	0.53
Transmembrane Helix	124	145	0.73
Cytoplasmic	146	156	0.45
Transmembrane Helix	157	182	0.75
Non-Cytoplasmic	183	211	0.48
Transmembrane Helix	212	235	0.81
Cytoplasmic	236	244	0.34
Transmembrane Helix	245	268	0.85
Non-Cytoplasmic	269	273	0.37
Transmembrane Helix	274	297	0.84
Cytoplasmic	298	301	0.38
Transmembrane Helix	302	326	0.86
Non-Cytoplasmic	327	334	0.39
Transmembrane Helix	335	357	0.86
Cytoplasmic	358	367	0.37
Transmembrane Helix	368	394	0.81
Non-Cytoplasmic	395	401	0.41

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHLDTLATL VAATLTLLLG RKLVHSVSFL KKYTIPEPVA GGLLVALALL VLKKSMGWEV  60
   61 NFDMSLRDPL MLAFFATIGL NANIASLRAG GRVVGIFLIV VVGLLVMQNA IGIGMASLLG 120
  121 LDPLMGLLAG SITLSGGHGT GAAWSKLFIE RYGFTNATEV AMACATFGLV LGGLIGGPVA 180
  181 RYLVKHSTTP NGIPDDQEVP TAFEKPDVGR MITSLVLIET IALIAICLTV GKIVAQLLAG 240
  241 TAFELPTFVC VLFVGVILSN GLSIMGFYRV FERAVSVLGN VSLSLFLAMA LMGLKLWELA 300
  301 SLALPMLAIL VVQTIFMALY AIFVTWRMMG KNYDAAVLAA GHCGFGLGAT PTAIANMQAI 360
  361 TERFGPSHMA FLVVPMVGAF FIDIVNALVI KLYLMLPIFA G