YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLTJ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDWNWGIF LQQAPFGNTT YLGWIWSGFQ VTIALSICAW IIAFLVGSFF GILRTVPNRF  60
   61 LSGLGTLYVE LFRNVPLIVQ FFTWYLVIPE LLPEKIGMWF KAELDPNIQF FLSSMLCLGL 120
  121 FTAARVCEQV RAAIQSLPRG QKNAALAMGL TLPQAYRYVL LPNAYRVIVP PMTSEMMNLV 180
  181 KNSAIASTIG LVDMAAQAGK LLDYSAHAWE SFTAITLAYV LINAFIMLVM TLVERKVRLP 240
  241 GNMGGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.58
Transmembrane Helix	31	53	0.89
Cytoplasmic	54	68	0.69
Transmembrane Helix	69	88	0.78
Non-Cytoplasmic	89	107	0.83
Transmembrane Helix	108	127	0.89
Cytoplasmic	128	178	0.71
Transmembrane Helix	179	197	0.58
Non-Cytoplasmic	198	211	0.77
Transmembrane Helix	212	233	0.91
Cytoplasmic	234	246	0.93