YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLNP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFDWSAIWP AIPLLIEGAK MTLWISVLGL AGGLVIGLLA GFARTFGGWI ANHVALVFIE  60
   61 VIRGTPIVVQ VMFIYFALPM AFNDLRIDPF TAAVVTIMIN SGAYIAEITR GAVLSIHKGF 120
  121 REAGLALGLS RWETIRYVIL PLALRRMLPP LGNQWIISIK DTSLFIVIGV AELTRQGQEI 180
  181 IAGNFRALEI WSAVAVFYLI ITLVLSFILR RLERRMKIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.40
Transmembrane Helix	21	43	0.94
Cytoplasmic	44	53	0.33
Transmembrane Helix	54	78	0.78
Non-Cytoplasmic	79	88	0.36
Transmembrane Helix	89	108	0.74
Cytoplasmic	109	150	0.51
Transmembrane Helix	151	171	0.48
Non-Cytoplasmic	172	189	0.83
Transmembrane Helix	190	209	0.96
Cytoplasmic	210	219	0.91