YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLCA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.65
Transmembrane Helix	12	33	0.93
Non-Cytoplasmic	34	39	0.58
Transmembrane Helix	40	60	0.91
Cytoplasmic	61	70	0.57
Transmembrane Helix	71	91	0.90
Non-Cytoplasmic	92	125	0.69
Transmembrane Helix	126	151	0.80
Cytoplasmic	152	157	0.60
Transmembrane Helix	158	180	0.87
Non-Cytoplasmic	181	192	0.64
Transmembrane Helix	193	213	0.87
Cytoplasmic	214	222	0.73
Transmembrane Helix	223	242	0.88
Non-Cytoplasmic	243	251	0.65
Transmembrane Helix	252	269	0.87
Cytoplasmic	270	306	0.70
Transmembrane Helix	307	329	0.73
Non-Cytoplasmic	330	376	0.71
Transmembrane Helix	377	399	0.90
Cytoplasmic	400	410	0.79
Transmembrane Helix	411	430	0.91
Non-Cytoplasmic	431	438	0.62
Transmembrane Helix	439	463	0.84
Cytoplasmic	464	534	0.81
Transmembrane Helix	535	554	0.93
Non-Cytoplasmic	555	560	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTWTQMYMP MGGLGLSALV ALIPIIFFFV ALAVLRLKGH VAGAITLILS ILIAIFAFKM  60
   61 PIDMAFAAAG YGFIYGLWPI AWIIVAAVFL YKLTVASGQF DIIRSSVISI TDDQRLQVLL 120
  121 IGFSFGALLE GAAGFGAPVA ITGALLVGLG FKPLYAAGLC LIANTAPVAF GALGVPILVA 180
  181 GQVTGIDPFH IGAMAGRQLP FLSVLVPFWL VAMMDGWKGV KETWPAALVA GGSFAVTQFF 240
  241 TSNYIGPELP DITSALVSIV SLALFLKVWR PKNTETAISM GQSAGAMVVN KPSSGGPVPS 300
  301 EYSLGQIIRA WSPFLILTVL VTIWTMKPFK ALFAPGGAFY SLVINFQIPH LHQQVLKAAP 360
  361 IVAQPTPMDA VFKFDPLSAG GTAIFIAAII SIFILGVGIK KGIGVFAETL ISLKWPILSI 420
  421 GMVLAFAFVT NYSGMSTTLA LVLAGTGVMF PFFSPFLGWL GVFLTGSDTS SNALFGSLQS 480
  481 TTAQQINVSD TLLVAANTSG GVTGKMISPQ SIAVACAATG MVGRESELFR YTVKHSLIFA 540
  541 SVIGIITLLQ AYVFTGMLVS