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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GELS_CHICK
Protein type: Transmembrane
Type Confidence: 0.57
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKQGFGYIF LTIFCTMALK LNCVSSVSVA GLGYVVTAAV VLSAVPVSMV EHAEFSKAGK  60
   61 EPGLQIWRIE KFDLVPVPKN LYGDFFTGDS YLVLNTIRQR SGNLQYDLHF WLGDESSQDE 120
  121 RGAAAIFTVQ MDDYLQGKAV QHREVQGHES STFLGYFKSG IKYKAGGVAS GFRHVVPNEV 180
  181 TVQRLLQVKG RRTVRATEVP VSWESFNTGD CFILDLGSNI YQWCGSNSNR QERLKATVLA 240
  241 KGIRDNEKNG RAKVFVSEEG AEREEMLQVL GPKPSLPQGA SDDTKTDTAN RKLAKLYKVS 300
  301 NGAGNMAVSL VADENPFSQA ALNTEDCFIL DHGTDGKIFV WKGRSANSDE RKAALKTATD 360
  361 FIDKMGYPKH TQVQVLPESG ETPLFKQFFK NWRDKDQTEG LGEAYISGHV AKIEKVPFDA 420
  421 ATLHTSRAMA AQHGMEDDGS GKKQIWRIEG SEKVPVDPAT YGQFYGGDSY IILYDYRHAG 480
  481 KQGQIIYTWQ GAHSTQDEIA TSAFLTVQLD EELGGSPVQK RVVQGKEPPH LMSMFGGKPL 540
  541 IVYKGGTSRE GGQTTPAQTR LFQVRSSTSG ATRAVELDPA ASQLNSNDAF VLKTPSAAYL 600
  601 WVGRGSNSAE LSGAQELLKV LGARPVQVSE GREPDNFWVA LGGKAPYRTS PRLKDKKMDA 660
  661 YPPRLFACSN KSGRFTIEEV PGDLTQDDLA TDDVMILDTW DQVFVWIGKD AQEEEKTEAL 720
  721 KSAKRYIETD PASRDKRTPV TLVKQGLEPP TFSGWFLGWD DDYWSVDPLQ RAMADVDV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle