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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GDA1_CANAL
Protein type: Globular with Signal Peptide
Type Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINPRNLRLI IAVIGLVGIF AFFASSQHSL VDRTALQVNK PAADSPHVPP PAAAAAPVSP  60
   61 PPPSQQQKQQ EGSQKQLNDE NSDEKNTLQG TSYSGTKPPY EKVDGKSNKI LADKLDTTKN 120
  121 SKPNQQQQQN TQKGASEEKS AQNKITTPEE VSMDNGKCND IDYVVMIDAG STGSRVHVYE 180
  181 FNTCVKPPQL LSEEFEMLKP GLSSFDTDTV GAAKSLDPLL EVALKKVPKN KQSCTPVAVK 240
  241 ATAGLRLLGE TKSKAILDEV RSHLEKDYPF AVVSEDGISI MDGKDEGVYA WVTANYLLGN 300
  301 IGGKEKLPTA AVFDLGGGST QIVFEPDYKV DEVPVDGETK YHFTFGDNQY TLYQFSHLGY 360
  361 GLMQGRNKVN QLVLKNKLSE LNLQKYTKKE VKGAKATVDV SNPCIPPGVV AKDVQVELGE 420
  421 DEFYVVNMKG PSSKDSTVAG GSQCRYLAEK VLNKDAECTS KPCSFNGVHQ PSLTRTFNKN 480
  481 SDMYVFSYFY DRTNPIGMPS SFSVEELKDL SKLVCQGETF WKDILLDDHV KNLNEEPQWC 540
  541 LDLSFITAML HTGYDIPLHR ELKTAKTIDN NELGWCLGAS LPLLDKNNAK WTCRIDKTD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle