YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GCSP_NOSS1
Protein type: Transmembrane
Type Confidence: 0.63
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSYASIPQS SDEAHSTVGA SLQLDERKQD LNNFIQRHIG PSSADIQQML DVLGFSSLDD  60
   61 LIEKTVPSAI RLHEQLQLPE AQTEYAALAK LKQIASKNQV FRSYIGMGYY DTITPSVIGR 120
  121 NILENPGWYT AYTPYQPEIA QGRLEALLNF QTMIIDLTGL EIANASLLDE ATAAAEAMSM 180
  181 SYGVSKNKAN AYFVSHDCHP QIIDVLQTRA KPLGIEIIIG DHQTFDFDKP IFGAVLQYPA 240
  241 SDGTIYDYRA FIETSHAQGA LVTVAADPLS LTLLTPPGEF GADIAVGSTQ RFGIPLGFGG 300
  301 PHAAYFATKE EYKRQVPGRI VGVSKDVHGK TALRLALQTR EQHIRREKAT SNICTAQVLL 360
  361 AVMASMYAVY HGPEGLKQIA ERIHHLTLVL GVWLQRLGYT ITSQSFFDTL QIKLGEKPLQ 420
  421 EILEAAEAYR INLRIVDTST VGISLDETTT LEDVKDICRI FAGTDELPFV LNVQEFDWII 480
  481 QQSSLKDEPF SRQSSYLTHP VFNRYHSETE LLRYLHRLET KDLSLTTSMI PLGSCTMKLN 540
  541 ATSEMIPVTW EEFGRIHPFA PLTQTRGYQI LFQQLEAWLG EITGFAGVSL QPNAGSQGEY 600
  601 TGLLVIRQYH QSRGETHRNV CLIPNSAHGT NPASAVMCGM KVVAVACDAG GNIDIDDLKA 660
  661 KAEKHSHELA ALMVTYPSTH GVFEAGIQEI CAVIHSHGGQ VYMDGANMNA QVGICRPGDI 720
  721 GADVCHLNLH KTFCIPHGGG GPGMGPIGVA SHLVPFLPGH PVLESGKNPQ NIGAVAAAPW 780
  781 GSASILVISW MYIVMMGADG LTQATKVAIL NANYIAKKLA AYYPVLYKGQ NGLVAHECIL 840
  841 DLRALKKSAN IEIDDIAKRL IDYGFHAPTV SWPVAGTIMV EPTESESQAE LDRFCEALIA 900
  901 IRQEIADIEA GKVDIQDNSL KNAPHTVESL IVGEWPHPYS REQAAYPAPW TREHKFWPSV 960
  961 GRIDAAFGDR NFVCSCLPMD AYN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle