YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRR2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYFMRLALF LFCLMALVES RKPRRKRWTG HLETSKPSHL YKKNLDVTKI RTGKPRPLLR  60
   61 VEDHDFTMRP AFGGPAIPVG VDVQVESLDS ISEVDMDFTM TLYLRHYWRD ERLAFPSSSN 120
  121 RSMTFDGRLV KKIWVPDVFF VHSKRSFTHD TTTDNIMLRV FPDGHVLYSM RITVTAMCNM 180
  181 DFSHFPLDSQ TCSLELESYA YTDEDLMLYW KNGDESLKTD EKISLSQFLI QKFHTTSRLA 240
  241 FYSSTGWYNR LYINFTLRRH IFFFLLQTYF PATLMVMLSW VSFWIDHRAV PARVSLGIMT 300
  301 VLTMSTIITG VNASMPRVSY IRAVDIYLWV SFVFVFLSVL EYAAVNYLTT VQEQKERKLR 360
  361 DKFPCTCGML HSRTMTLDGS YSESEANSLA GYPRSHILPE EERQDKIVVH LALNSELTSS 420
  421 RKKGLLKGQM GLYIFQNTHA IDKYSRLIFP AFYIVFNLIY WSVFS

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	262	0.98
Transmembrane Helix	263	284	0.92
Cytoplasmic	285	293	0.75
Transmembrane Helix	294	313	0.92
Non-Cytoplasmic	314	325	0.77
Transmembrane Helix	326	350	0.87
Cytoplasmic	351	443	0.93
Transmembrane Helix	444	464	0.75
Non-Cytoplasmic	465	465	0.84