YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GALP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	37	0.94
Non-Cytoplasmic	38	55	0.85
Transmembrane Helix	56	77	0.92
Cytoplasmic	78	83	0.93
Transmembrane Helix	84	102	0.95
Non-Cytoplasmic	103	108	0.76
Transmembrane Helix	109	130	0.91
Cytoplasmic	131	142	0.82
Transmembrane Helix	143	160	0.94
Non-Cytoplasmic	161	171	0.67
Transmembrane Helix	172	192	0.95
Cytoplasmic	193	250	0.97
Transmembrane Helix	251	272	0.89
Non-Cytoplasmic	273	289	0.91
Transmembrane Helix	290	311	0.93
Cytoplasmic	312	319	0.88
Transmembrane Helix	320	342	0.93
Non-Cytoplasmic	343	349	0.87
Transmembrane Helix	350	373	0.94
Cytoplasmic	374	384	0.92
Transmembrane Helix	385	409	0.82
Non-Cytoplasmic	410	416	0.81
Transmembrane Helix	417	436	0.94
Cytoplasmic	437	464	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDAKKQGRS NKAMTFFVCF LAALAGLLFG LDIGVIAGAL PFIADEFQIT SHTQEWVVSS  60
   61 MMFGAAVGAV GSGWLSFKLG RKKSLMIGAI LFVAGSLFSA AAPNVEVLIL SRVLLGLAVG 120
  121 VASYTAPLYL SEIAPEKIRG SMISMYQLMI TIGILGAYLS DTAFSYTGAW RWMLGVIIIP 180
  181 AILLLIGVFF LPDSPRWFAA KRRFVDAERV LLRLRDTSAE AKRELDEIRE SLQVKQSGWA 240
  241 LFKENSNFRR AVFLGVLLQV MQQFTGMNVI MYYAPKIFEL AGYTNTTEQM WGTVIVGLTN 300
  301 VLATFIAIGL VDRWGRKPTL TLGFLVMAAG MGVLGTMMHI GIHSPSAQYF AIAMLLMFIV 360
  361 GFAMSAGPLI WVLCSEIQPL KGRDFGITCS TATNWIANMI VGATFLTMLN TLGNANTFWV 420
  421 YAALNVLFIL LTLWLVPETK HVSLEHIERN LMKGRKLREI GAHD