YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47117929, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNMAQAEDA VQPLLQQFQQ LFFISKIAGI LPQDLEKFRS RNLLEKSRNG MIYMLSTLIL  60
   61 YVVLYNILIY SFGEEDRSLK ASQSTLTFVI GLFLTYIGLI MMVSDQLTAL RNQGRIGELY 120
  121 ERIRLVDERL YKEGCVMDNS TIGRRIRIML IMTVIFELSI LVSTYVKLVD YSQWMSLLWI 180
  181 VSAIPTFINT LDKIWFAVSL YALKERFEAI NATLEELVDT HEKHKLWLRG NQEVPPPLDS 240
  241 SQPPQYDSNL EYLYKELGGM DIGSIGKSSV SGSGKNKVAP VAHSMNSFGE AIDAASRKPP 300
  301 PPPLATNMVH ESELGNAAKV EEKLNNLCQV HDEICEIGKA LNELWSYPIL SLMAYGFLIF 360
  361 TAQLYFLYCA TQYQSIPSLF RSAKNPFITV IVLSYTSGKC VYLIYLSWKT SQASKRTGIS 420
  421 LHKCGVVADD NLLYEIVNHL SLKLLNHSVD FSACGFFTLD METLYGVSGG ITSYLIILIQ 480
  481 FNLAAQQAKE AIQTFNSLND TAGLVGAATD MDNISSTLRD FVTTTMTPAV

Type	Start	End	Confidence
Cytoplasmic	1	48	0.97
Transmembrane Helix	49	69	0.94
Non-Cytoplasmic	70	83	0.81
Transmembrane Helix	84	103	0.91
Cytoplasmic	104	147	0.92
Transmembrane Helix	148	168	0.92
Non-Cytoplasmic	169	174	0.85
Transmembrane Helix	175	196	0.90
Cytoplasmic	197	346	0.98
Transmembrane Helix	347	367	0.91
Non-Cytoplasmic	368	386	0.86
Transmembrane Helix	387	406	0.72
Cytoplasmic	407	530	0.64