YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr58a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKFMYIYG IGCGLMPAPL KKGQFLLGYK QRWYLIYTAC LHGGLLTVLP FTFPHYMYDD  60
   61 SYMSSNPVLK WTFNLTNITR IMAMFSGVLL MWFRRKRILN LGENLILHCL KCKTLDNRSK 120
  121 KYSKLRKRVR NVLFQMLLVA NLSILLGALI LFRIHSVQRI SKTAMIVAHI TQFIYVVFMM 180
  181 TGICVILLVL HWQSERLQIA LKDLCSFLNH EERNSLTLSE NKANRSLGKL AKLFKLFAEN 240
  241 QRLVREVFRT FDLPIALLLL KMFVTNVNLV YHGVQFGNDT IETSSYTRIV GQWVVISHYW 300
  301 SAVLLMNVVD DVTRRSDLKM GDLLREFSHL ELVKRDFHLQ LELFSDHLRC HPSTYKVCGL 360
  361 FIFNKQTSLA YFFYVLVQVL VLVQFDLKNK VEKRN

Type	Start	End	Confidence
Cytoplasmic	1	32	0.64
Transmembrane Helix	33	54	0.93
Non-Cytoplasmic	55	72	0.88
Transmembrane Helix	73	93	0.92
Cytoplasmic	94	131	0.97
Transmembrane Helix	132	154	0.91
Non-Cytoplasmic	155	170	0.85
Transmembrane Helix	171	192	0.93
Cytoplasmic	193	252	0.97
Transmembrane Helix	253	272	0.57
Non-Cytoplasmic	273	288	0.59
Transmembrane Helix	289	309	0.38
Cytoplasmic	310	395	0.64