YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr47b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRDDGFVYC YGNLYSLLLY WGLVTIRVRS PDRGGAFSNR WTVCYALFTR SFMVICFMAT  60
   61 VMTKLRDPEM SAAMFGHLSP LVKAIFTWEC LSCSVTYIEY CLSLDLQKDR HLKLVARMQE 120
  121 FDRSVLMVFP HVQWNYRRAR LKYWYGTVIV GFCFFSFSIS LIFDTTRCTC GIPSTLLMAF 180
  181 TYTLLTSSVG LLGFVHIGIM DFIRVRLRLV QQLLHQLYQA DDSSEVHERI AYLFEMSKRC 240
  241 SFLLAELNGV FGFAAAAGIF YDFTIMTCFV YVICQKLLER EPWDPEYVYM LLHVAIHTYK 300
  301 VVITSTYGYL LLREKRNCMH LLSQYSRYFS GQDVARRKTE DFQHWRMHNR QAAMVGSTTL 360
  361 LSVSTIYLVY NGMANYVIIL VQLLFQQQQI KDHQLTSGKD VDIVGPMGPI THMD

Type	Start	End	Confidence
Cytoplasmic	1	6	0.63
Transmembrane Helix	7	28	0.77
Non-Cytoplasmic	29	40	0.55
Transmembrane Helix	41	65	0.81
Cytoplasmic	66	142	0.80
Transmembrane Helix	143	163	0.96
Non-Cytoplasmic	164	177	0.85
Transmembrane Helix	178	199	0.92
Cytoplasmic	200	241	0.94
Transmembrane Helix	242	261	0.87
Non-Cytoplasmic	262	290	0.83
Transmembrane Helix	291	311	0.87
Cytoplasmic	312	354	0.91
Transmembrane Helix	355	379	0.77
Non-Cytoplasmic	380	414	0.88