YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr36a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDWVGLLLK VLYYYGQIIG LINFEIDWQR GRVVAAQRGI LFAIAINVLI CMVLLLQISK  60
   61 KFNLDVYFGR ANQLHQYVII VMVSLRMASG ISAILNRWRQ RAQLMRLVEC VLRLFLKKPH 120
  121 VKQMSRWAIL VKFSVGVVSN FLQMAISMES LDRLGFNEFV GMASDFWMSA IINMAISQHY 180
  181 LVILFVRAYY HLLKTEVRQA IHESQMLSEI YPRRAAFMTK CCYLADRIDN IAKLQNQLQS 240
  241 IVTQLNQVFG IQGIMVYGGY YIFSVATTYI TYSLAINGIE ELHLSVRAAA LVFSWFLFYY 300
  301 TSAILNLFVM LKLFDDHKEM ERILEERTLF TSALDVRLEQ SFESIQLQLI RNPLKIEVLD 360
  361 IFTITRSSSA AMIGSIITNS IFLIQYDMEY F

Type	Start	End	Confidence
Cytoplasmic	1	38	0.69
Transmembrane Helix	39	58	0.96
Non-Cytoplasmic	59	74	0.92
Transmembrane Helix	75	96	0.93
Cytoplasmic	97	127	0.94
Transmembrane Helix	128	147	0.94
Non-Cytoplasmic	148	165	0.92
Transmembrane Helix	166	189	0.85
Cytoplasmic	190	252	0.94
Transmembrane Helix	253	276	0.78
Non-Cytoplasmic	277	290	0.79
Transmembrane Helix	291	311	0.88
Cytoplasmic	312	363	0.94
Transmembrane Helix	364	384	0.71
Non-Cytoplasmic	385	391	0.66