YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr33a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQIMNWFSM VIGLIPLNRQ QSETNFILDY AMMCIVPIFY VACYLLINLS HIIGLCLLDS  60
   61 CNSVCKLSSH LFMHLGAFLY LTITLLSLYR RKEFFQQFDA RLNDIDAVIQ KCQRVAEMDK 120
  121 VKVTAVKHSV AYHFTWLFLF CVFTFALYYD VRSLYLTFGN LAFIPFMVSS FPYLAGSIIQ 180
  181 GEFIYHVSVI SQRFEQINML LEKINQEARH RHAPLTVFDI ESEGKKERKT VTPITVMDGR 240
  241 TTTGFGNENK FAGEMKRQEG QQKNDDDDLD TSNDEDEDDF DYDNATIAEN TGNTSEANLP 300
  301 DLFKLHDKIL ALSVITNGEF GPQCVPYMAA CFVVSIFGIF LETKVNFIVG GKSRLLDYMT 360
  361 YLYVIWSFTT MMVAYIVLRL CCNANNHSKQ SAMIVHEIMQ KKPAFMLSND LFYNKMKSFT 420
  421 LQFLHWEGFF QFNGVGLFAL DYTFIFSTVS AATSYLIVLL QFDMTAILRN EGLMS

Type	Start	End	Confidence
Cytoplasmic	1	25	0.91
Transmembrane Helix	26	52	0.77
Non-Cytoplasmic	53	69	0.79
Transmembrane Helix	70	89	0.93
Cytoplasmic	90	129	0.92
Transmembrane Helix	130	149	0.93
Non-Cytoplasmic	150	160	0.66
Transmembrane Helix	161	184	0.74
Cytoplasmic	185	323	0.91
Transmembrane Helix	324	341	0.81
Non-Cytoplasmic	342	361	0.66
Transmembrane Helix	362	382	0.91
Cytoplasmic	383	422	0.70
Transmembrane Helix	423	440	0.45
Non-Cytoplasmic	441	441	0.24
Transmembrane Helix	442	462	0.77
Cytoplasmic	463	475	0.54