YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr32a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPNTWVIEM PTQKTRSHPY PRRISPYRPP VLNRDAFSRD APPMPARNHD HPVFEDIRTI  60
   61 LSVLKASGLM PIYEQVSDYE VGPPTKTNEF YSFFVRGVVH ALTIFNVYSL FTPISAQLFF 120
  121 SYRETDNVNQ WIELLLCILT YTLTVFVCAH NTTSMLRIMN EILQLDEEVR RQFGANLSQN 180
  181 FGFLVKFLVG ITACQAYIIV LKIYAVQGEI TPTSYILLAF YGIQNGLTAT YIVFASALLR 240
  241 IVYIRFHFIN QLLNGYTYGQ QHRRKEGGAR ARRQRGDVNP NVNPALMEHF PEDSLFIYRM 300
  301 HNKLLRIYKG INDCCNLILV SFLGYSFYTV TTNCYNLFVQ ITGKGMVSPN ILQWCFAWLC 360
  361 LHVSLLALLS RSCGLTTTEA NATSQILARV YAKSKEYQNI IDKFLTKSIK QEVQFTAYGF 420
  421 FAIDNSTLFK IFSAVTTYLV ILIQFKQLED SKVEDPVPEQ T

Type	Start	End	Confidence
Cytoplasmic	1	92	0.97
Transmembrane Helix	93	116	0.78
Non-Cytoplasmic	117	130	0.79
Transmembrane Helix	131	152	0.88
Cytoplasmic	153	181	0.91
Transmembrane Helix	182	201	0.92
Non-Cytoplasmic	202	219	0.76
Transmembrane Helix	220	243	0.83
Cytoplasmic	244	309	0.96
Transmembrane Helix	310	329	0.80
Non-Cytoplasmic	330	349	0.75
Transmembrane Helix	350	370	0.82
Cytoplasmic	371	461	0.81