YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr28b-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIEMAKEPV NPTDTPDIEV TPGLCQPLRR RFRRFVTAKQ LYECLRPVFH VTYIHGLTSF  60
   61 YISCDTKTGK KAIKKTIFGY INGIMHIAMF VFAYSLTIYN NCESVASYFF RSRITYFGDL 120
  121 MQIVSGFIGV TVIYLTAFVP NHRLERCLQK FHTMDVQLQT VGVKIMYSKV LRFSYMVLIS 180
  181 MFLVNVLFTG GTFSVLYSSE VAPTMALHFT FLIQHTVIAI AIALFSCFTY LVEMRLVMVN 240
  241 KVLKNLAHQW DTRSLKAVNQ KQRSLQCLDS FSMYTIVTKD PAEIIQESME IHHLICEAAA 300
  301 TANKYFTYQL LTIISIAFLI IVFDAYYVLE TLLGKSKRES KFKTVEFVTF FSCQMILYLI 360
  361 AIISIVEGSN RAIKKSEKTG GIVHSLLNKT KSAEVKEKLQ QFSMQLMHLK INFTAAGLFN 420
  421 IDRTLYFTIS GALTTYLIIL LQFTSNSPNN GYGNGSSCCE TFNNMTNHTL

Type	Start	End	Confidence
Cytoplasmic	1	76	0.98
Transmembrane Helix	77	98	0.94
Non-Cytoplasmic	99	119	0.87
Transmembrane Helix	120	139	0.93
Cytoplasmic	140	172	0.95
Transmembrane Helix	173	196	0.88
Non-Cytoplasmic	197	210	0.87
Transmembrane Helix	211	232	0.92
Cytoplasmic	233	304	0.99
Transmembrane Helix	305	328	0.86
Non-Cytoplasmic	329	346	0.91
Transmembrane Helix	347	366	0.92
Cytoplasmic	367	423	0.93
Transmembrane Helix	424	444	0.76
Non-Cytoplasmic	445	470	0.83