YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr28a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKLWERFS QADNVFQALR PLTFISLLGL APFRLNLNPR KEVQTSKFSF FAGIVHFLFF  60
   61 VLCFGISVKE GDSIIGYFFQ TNITRFSDGT LRLTGILAMS TIFGFAMFKR QRLVSIIQNN 120
  121 IVVDEIFVRL GMKLDYRRIL LSSFLISLGM LLFNVIYLCV SYSLLVSATI SPSFVTFTTF 180
  181 ALPHINISLM VFKFLCTTDL ARSRFSMLNE ILQDILDAHI EQLSALELSP MHSVVNHRRY 240
  241 SHRLRNLIST PMKRYSVTSV IRLNPEYAIK QVSNIHNLLC DICQTIEEYF TYPLLGIIAI 300
  301 SFLFILFDDF YILEAILNPK RLDVFEADEF FAFFLMQLIW YIVIIVLIVE GSSRTILHSS 360
  361 YTAAIVHKIL NITDDPELRD RLFRLSLQLS HRKVLFTAAG LFRLDRTLIF TITGAATCYL 420
  421 IILIQFRFTH HMDDTSSNST NNLHSIHLGD

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.81
Transmembrane Helix	18	37	0.83
Cytoplasmic	38	47	0.91
Transmembrane Helix	48	68	0.96
Non-Cytoplasmic	69	88	0.93
Transmembrane Helix	89	108	0.95
Cytoplasmic	109	138	0.97
Transmembrane Helix	139	160	0.91
Non-Cytoplasmic	161	173	0.68
Transmembrane Helix	174	197	0.82
Cytoplasmic	198	288	0.99
Transmembrane Helix	289	312	0.83
Non-Cytoplasmic	313	329	0.93
Transmembrane Helix	330	349	0.89
Cytoplasmic	350	406	0.91
Transmembrane Helix	407	428	0.86
Non-Cytoplasmic	429	450	0.91