YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr22f-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMFQPRRGF SCHLAWFMLQ TTLYASWLLG LFPFTFDSRR KQLKRSRWLL LYGFVLHSLA  60
   61 MCLAMSSHLA SKQRRKYNAF ERNPLLEKIY MQFQVTTFFT ISVLLLMNVW KSNTVRKIAN 120
  121 ELLTLEGQVK DLLTLKNCPN FNCFVIKKHV AAIGQFVISI YFCLCQENSY PKILKILCCL 180
  181 PSVGLQLIIM HFHTEIILVY RYVWLVNETL EDSHHLSSSR IHALASLYDR LLKLSELVVA 240
  241 CNDLQLILML IIYLIGNTVQ IFFLIVLGVS MNKRYIYLVA SPQLIINFWD FWLNIVVCDL 300
  301 AGKCGDQTSK VLKLFTDLEH DDEELERSLN EFAWLCTHRK FRFQLCGLFS INHNMGFQMI 360
  361 ITSFLYLVYL LQFDFMNL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.52
Transmembrane Helix	12	36	0.82
Non-Cytoplasmic	37	47	0.56
Transmembrane Helix	48	70	0.92
Cytoplasmic	71	88	0.55
Transmembrane Helix	89	110	0.85
Non-Cytoplasmic	111	144	0.52
Transmembrane Helix	145	165	0.44
Cytoplasmic	166	172	0.89
Transmembrane Helix	173	194	0.81
Non-Cytoplasmic	195	245	0.90
Transmembrane Helix	246	269	0.88
Cytoplasmic	270	348	0.87
Transmembrane Helix	349	370	0.87
Non-Cytoplasmic	371	378	0.78