YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238861520, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.84
Transmembrane Helix	12	31	0.90
Non-Cytoplasmic	32	47	0.87
Transmembrane Helix	48	70	0.89
Cytoplasmic	71	85	0.80
Transmembrane Helix	86	104	0.92
Non-Cytoplasmic	105	111	0.75
Transmembrane Helix	112	132	0.92
Cytoplasmic	133	181	0.85
Transmembrane Helix	182	210	0.78
Non-Cytoplasmic	211	218	0.50
Transmembrane Helix	219	239	0.90
Cytoplasmic	240	257	0.54
Transmembrane Helix	258	272	0.59
Non-Cytoplasmic	273	306	0.85
Transmembrane Helix	307	327	0.90
Cytoplasmic	328	339	0.88
Transmembrane Helix	340	363	0.85
Non-Cytoplasmic	364	375	0.75
Transmembrane Helix	376	395	0.96
Cytoplasmic	396	414	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSLPRLKM PRLPGFSILV WISTALKGWV MGSREKDTDS LIMYDRTLLW LTFGLAAIGF  60
   61 IMVTSASMPI GQRLTNDPFF FAKRDGVYLI LAFILAIITL RLPMEFWQRY SATMLLGSII 120
  121 LLMIVLVVGS SVKGASRWID LGLLRIQPAE LTKLSLFCYI ANYLVRKGDE VRNNLRGFLK 180
  181 PMGVILVLAV LLLAQPDLGT VVVLFVTTLA MLFLAGAKLW QFIAIIGMGI SAVVLLILAE 240
  241 PYRIRRVTAF WNPWEDPFGS GYQLTQSLMA FGRGELWGQG LGNSVQKLEY LPEAHTDFIF 300
  301 AIIGEELGYV GVVLALLMVF FVAFRAMSIG RKALEIDHRF SGFLACSIGI WFSFQALVNV 360
  361 GAAAGMLPTK GLTLPLISYG GSSLLIMSTA IMMLLRIDYE TRLEKAQAFV RGSR