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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FTSK_SHIFL
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEYTEDKE VTLTKLSSGR RLLEALLILI VLFAVWLMAA LLSFNPSDPS WSQTAWHEPI  60
   61 HNLGGMPGAW LADTLFFIFG VMAYTIPVII VGGCWFAWRH QSSDEYIDYF AVSLRIIGVL 120
  121 ALILTSCGLA AINADDIWYF ASGGVIGSLL STTLQPLLHS SGGTIALLCV WAAGLTLFTG 180
  181 WSWVTIAEKL GGWILNILTF ASNRTRRDDT WVDEDEYEDD EEYEDENHGK QHESRRARIL 240
  241 RGALARRKRL AEKFINPMGR QTDAALFSGK RMDDDEEITY TARGVAADPD DVLFSGNRAT 300
  301 QPEYDEYDPL LNSAPITEPV AVAAAATTAT QSWAAPVEPV TQTPPVASVD VPPSQPTVAW 360
  361 QPVPGPQTGE PVIAPAPEGY PQQSQYAQPA VQYNEPLQQP VQPQQPYYAP AAEQPAQQPY 420
  421 YAPAPEQPVA GNAWQAEEQQ STFAPQSTYQ TEQTYQQPAA QEPLYQQPQP VEQQPVVEPE 480
  481 PVVEETKPAR PPLYYFEEVE EKRAREREQL AAWYQPIPEP VKEPEPIKSS LKAPSVAAVP 540
  541 PVEAAAAVSP LASGVKKATL ATGAAATVAA PVFSLANSGG PRPQVKEGIG PQLPRPKRIR 600
  601 VPTRRELASY GIKLPSQRAA EEKAREAQRN QYDSGDQYND DEIDAMQQDE LARQFAQTQQ 660
  661 QRYGEQYQHD VPVNAEDADA AAEAELARQF AQTQQQRYSG EQPAGANPFS LDDFEFSPMK 720
  721 ALLDDGPHEP LFTPIVEPVQ QPQQPVAPQQ QYQQPQQPVA PQQQYQQPQQ QVAPQPQYQQ 780
  781 PQQPVAPQQQ YQQPQQPVAP QPQYQQPQQP VAPQPQYQQP QQPVAPQPQD TLLHPLLMRN 840
  841 GDSRPLHKPT TPLPSLDLLT PPPSEVEPVD TFALEQMARL VEARLADFRI KADVVNYSPG 900
  901 PVITRFELNL APGVKAARIS NLSRDLARSL STVAVRVVEV IPGKPYVGLE LPNKKRQTVY 960
  961 LREVLDNAKF RDNPSPLTVV LGKDIAGEPV VADLAKMPHL LVAGTTGSGK SVGVNAMILS1020
 1021 MLYKAQPEDV RFIMIDPKML ELSVYEGIPH LLTEVVTDMK DAANALRWCV NEMERRYKLM1080
 1081 SALGVRNLAG YNEKIAEADR MMRPIPDPYW KPGDSMDAQH PVLKKEPYIV VLVDEFADLM1140
 1141 MTVGKKVEEL IARLAQKARA AGIHLVLATQ RPSVDVITGL IKANIPTRIA FTVSSKIDSR1200
 1201 TILDQAGAES LLGMGDMLYS GPNSTLPVRV HGAFVRDQEV HAVVQDWKAR GRPQYVDGIT1260
 1261 SDSESEGGAG GFDGAEELDP LFDQAVQFVT EKRKASISGV QRQFRIGYNR AARIIEQMEA1320
 1321 QGIVSEQGHN GNREVLAPPP FD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle