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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FTSK_ECOL6
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEYTEDKE VTLTKLSSGR RLLEALLILI VLFAVWLMAA LLSFNPSDPS WSQTAWHEPI  60
   61 HNLGGMPGAW LADTLFFIFG VMAYTIPVII VGGCWFAWRH QSSDEYIDYF AVSLRIIGVL 120
  121 ALILTSCGLA AINADDIWYF ASGGVIGSLL STTLQPLLHS SGGTIALLCV WAAGLTLFTG 180
  181 WSWVTIAEKL GGWILNILTF ASNRTRRDDT WVDEDEYEDD EEYEDENHGK QHESRRARIL 240
  241 RGALARRKRL AEKFINPMGR QTDAALFSGK RMDDEEEITY TARGVAADPD DVLFSGNRAT 300
  301 QPEYDEYDPL LNGAPITEPV AVAAAATTAT QSWAAPVEPV TQTPPVASVD VPPTQPTVAW 360
  361 QPVPGPQTGE PVIAPAPEGY PHQSQYAQPA VQYNEPLQQP VQPQQPYYAP AAEQPVQQPY 420
  421 YAPAAEQPVQ QPYYAPAPEQ PVAGNAWQAE EQQSTFAPQS TYQTEQTYQQ PAAQEPLYQQ 480
  481 PQPVEQQPVV EPEPVVEETK PTRPPLYYFE EVEEKRARER EQLAAWYQPI PEPVKEPEPI 540
  541 KSSLKAPSVA AVPPVEAAAA VSPLASGVKK ATLATGAAAT VAAPVFSLAN SGGPRPQVKE 600
  601 GIGPQLPRPK RIRVPTRREL ASYGIKLPSQ RAAEEKAREA QRNQYDSGDQ YNDDEIDAMQ 660
  661 QDELARQFAQ TQQQRYGEQY QHDVPVNTED ADAAAEAELA RQFAQTQQQR YSGEQPAGAN 720
  721 PFSLDDFEFS PMKALLDDGP HEPLFTPIVE PVQQPQQPVA PQQQYQQPQQ PVAPQPQYQQ 780
  781 PQQPVAPQPQ YQQPQYQQPQ QPVAPQQQYQ QPQQPVTQQP QYQQPQQPVV PQPQDTLLHP 840
  841 LLMRNGDSRP LHKPTTPLPS LDLLTPPPSE VEPVDTFALE QMARLVEARL ADFRIKADVV 900
  901 NYSPGPVITR FELNLAPGVK AARISNLSRD LARSLSTVAV RVVEVIPGKP YVGLELPNKK 960
  961 RQTVYLREVL DNAKFRDNPS PLTVVLGKDI AGEPVVADLA KMPHLLVAGT TGSGKSVGVN1020
 1021 AMILSMLYKA QPEDVRFIMI DPKMLELSVY EGIPHLLTEV VTDMKDAANA LRWCVNEMER1080
 1081 RYKLMSALGV RNLAGYNEKI AEADRMMRPI PDPYWKPGDS MDAQHPVLKK EPYIVVLVDE1140
 1141 FADLMMTVGK KVEELIARLA QKARAAGIHL VLATQRPSVD VITGLIKANI PTRIAFTVSS1200
 1201 KIDSRTILDQ AGAESLLGMG DMLYSGPNST LPVRVHGAFV RDQEVHAVVQ DWKARGRPQY1260
 1261 VDGITSDSES EGGVGGFDGA EELDPLFDQA VQFVTEKRKA SISGVQRQFR IGYNRAARII1320
 1321 EQMEAQGIVS EQGHNGNREV LAPPPFD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle