YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FSR_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.75
Transmembrane Helix	21	45	0.62
Non-Cytoplasmic	46	56	0.49
Transmembrane Helix	57	80	0.80
Cytoplasmic	81	88	0.49
Transmembrane Helix	89	110	0.73
Non-Cytoplasmic	111	112	0.46
Transmembrane Helix	113	131	0.87
Cytoplasmic	132	151	0.86
Transmembrane Helix	152	173	0.92
Non-Cytoplasmic	174	179	0.86
Transmembrane Helix	180	203	0.90
Cytoplasmic	204	222	0.96
Transmembrane Helix	223	243	0.93
Non-Cytoplasmic	244	264	0.90
Transmembrane Helix	265	286	0.91
Cytoplasmic	287	293	0.89
Transmembrane Helix	294	313	0.95
Non-Cytoplasmic	314	319	0.72
Transmembrane Helix	320	340	0.94
Cytoplasmic	341	350	0.82
Transmembrane Helix	351	373	0.93
Non-Cytoplasmic	374	380	0.84
Transmembrane Helix	381	399	0.97
Cytoplasmic	400	406	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSEQPQPV AGAAASTTKA RTSFGILGAI SLSHLLNDMI QSLILAIYPL LQSEFSLTFM  60
   61 QIGMITLTFQ LASSLLQPVV GYWTDKYPMP WSLPIGMCFT LSGLVLLALA GSFGAVLLAA 120
  121 ALVGTGSSVF HPESSRVARM ASGGRHGLAQ SIFQVGGNFG SSLGPLLAAV IIAPYGKGNV 180
  181 AWFVLAALLA IVVLAQISRW YSAQHRMNKG KPKATIINPL PRNKVVLAVS ILLILIFSKY 240
  241 FYMASISSYY TFYLMQKFGL SIQNAQLHLF AFLFAVAAGT VIGGPVGDKI GRKYVIWGSI 300
  301 LGVAPFTLIL PYASLHWTGV LTVIIGFILA SAFSAILVYA QELLPGRIGM VSGLFFGFAF 360
  361 GMGGLGAAVL GLIADHTSIE LVYKICAFLP LLGMLTIFLP DNRHKD