YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30043793, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKRKPYVR PMTSTWWKKL PFYRFYMLRE GTAVPAVWFS IELIFALFAL KNGPEAWAGF  60
   61 VDFLQNPVIV IINLITLTAA LLHTKTWFEL APKAANIIVK DEKMGPEPII KSLWAVTVVA 120
  121 TIVILFVALY W

Type	Start	End	Confidence
Cytoplasmic	1	25	0.94
Transmembrane Helix	26	49	0.84
Non-Cytoplasmic	50	66	0.84
Transmembrane Helix	67	88	0.88
Cytoplasmic	89	108	0.96
Transmembrane Helix	109	130	0.92
Non-Cytoplasmic	131	131	0.99