YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRDC_HELPJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQEEIIEGY YGASKGLKKS GIYAKLDFLQ SATGLILALF MIAHMFLVSS ILISDEAMYK  60
   61 VAKFFEGSLF LKAGEPAIVS VVAAGVILIL VAHAFLALRK FPINYRQYKV FKTHKHLMKH 120
  121 GDTSLWFIQA LTGFAMFFLA SIHLFVMLTE PESIGPHGSS YRFVTQNFWL LYIFLLFAVE 180
  181 LHGSIGLYRL AIKWGWFKNV SIQGLRKIKW AMSVFFIVLG LCTYGAYIKK GLENKDNGIK 240
  241 TMQEAIEADG KFHKE

Type	Start	End	Confidence
Cytoplasmic	1	27	0.94
Transmembrane Helix	28	48	0.88
Non-Cytoplasmic	49	76	0.85
Transmembrane Helix	77	97	0.95
Cytoplasmic	98	124	0.92
Transmembrane Helix	125	147	0.94
Non-Cytoplasmic	148	167	0.96
Transmembrane Helix	168	190	0.92
Cytoplasmic	191	207	0.93
Transmembrane Helix	208	228	0.92
Non-Cytoplasmic	229	255	0.96