YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FMT_COXBU
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKIVFAGT PQFAVPTLRA LIDSSHRVLA VYTQPDRPSG RGQKIMESPV KEIARQNEIP  60
   61 IIQPFSLRDE VEQEKLIAMN ADVMVVVAYG LILPKKALNA FRLGCVNVHA SLLPRWRGAA 120
  121 PIQRAILAGD RETGISIMQM NEGLDTGDVL AKSACVISSE DTAADLHDRL SLIGADLLLE 180
  181 SLAKLEKGDI KLEKQDEASA TYASKIQKQE ALIDWRKSAV EIARQVRAFN PTPIAFTYFE 240
  241 GQPMRIWRAT VVDEKTDFEP GVLVDADKKG ISIAAGSGIL RLHQLQLPGK RVCSAGDFIN 300
  301 AHGDKLIPGK TVFG

Type	Start	End	Confidence
Signal Peptide	1	20	0.50
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	314	0.99