YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FMD1_NEIGO
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLQKGFTL IELMIVIAIV GILAAVALPA YQDYTARAQV SEAILLAEGQ KSAVTEYYLN  60
   61 HGIWPENNPA GVASPASDIK GKYVQSVTVA NGVVTAQMKS DGVNKEIKNK KLSLWARREA 120
  121 GSVKWFCGQP VTRDNAGTDA VTADTTGKDK EIDTKHLPST CRCFQIGSVK WFCGQPVTRD 180
  181 NAGTDAVTAD TTGKDKEIDT KHLPSTCRDK SSAE

Type	Start	End	Confidence
Cytoplasmic	1	7	0.59
Transmembrane Helix	8	31	0.63
Non-Cytoplasmic	32	214	0.90