YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25403546
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNLFFQSI SNSLHPIFNS EKFLQIMSSL SEIILLILIF SWILKKISSF KINKIISRMK  60
   61 IIERLSVGSQ ESIILVEVKQ LRLLLGVTKK NISHLHTFPS NSKDELIKET NDTLLQKNLF 120
  121 DRSLKNFSKT SWKKTMFYRI IPFVFLLSLC PSAHADMPGL TSHILDDGSQ TWSVPVQTLV 180
  181 FLTSLTFLPA FLLMMTSFTR IVIVFGLLRN ALGTPYAPPN QILLGLALFL TFFIMSPTFE 240
  241 KIYKDAYVPF SQEKMNMEDA ILKGSMPLKK FMLNQIRTPD LELFSKLAHI SSYKNKNDIP 300
  301 MRILLPSFIT SELKTAFQIG FTIFIPFLII DLVVASVLMA LGMMMVPPST ISLPFKLMLF 360
  361 VLVDGWQLLI TSLAHSFNT

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.96
Transmembrane Helix	23	44	0.91
Cytoplasmic	45	134	0.99
Transmembrane Helix	135	155	0.93
Non-Cytoplasmic	156	178	0.88
Transmembrane Helix	179	204	0.80
Cytoplasmic	205	218	0.73
Transmembrane Helix	219	239	0.79
Non-Cytoplasmic	240	320	0.85
Transmembrane Helix	321	343	0.87
Cytoplasmic	344	352	0.70
Transmembrane Helix	353	375	0.80
Non-Cytoplasmic	376	379	0.68