YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FLIP_AGRFC
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRFLVTIAV LLALPGLANA QQFPSDLFNT QIDGSVAAWI IRTFGLLTVL SVAPGILIMV  60
   61 TSFPRFVIAF SILRSGMGLA STPSNMILLS MAMFMTFYVM SPTFDKAWTD GVQPLLQNQI 120
  121 NEQQAVQRIA EPFRTFMNAN TRDKDLKLFV DIARERGQVV MTDNVVDYRV LVPAFMLSEI 180
  181 RRGFEIGFLI ILPFLVIDLI VATITMAMGM MMLPPTSISL PFKILFFVLI DGWNLLVGSL 240
  241 VRSFN

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	37	0.97
Transmembrane Helix	38	63	0.80
Cytoplasmic	64	77	0.71
Transmembrane Helix	78	99	0.79
Non-Cytoplasmic	100	185	0.84
Transmembrane Helix	186	209	0.87
Cytoplasmic	210	219	0.66
Transmembrane Helix	220	241	0.82
Non-Cytoplasmic	242	245	0.66