YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FHIA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRSDLLTL LTINFIVVTK GAERISEVSA RFTLDAMPGK QMAIDADLNA GLINQAQAQT  60
   61 RRKDVASEAD FYGAMDGASK FVRGDAIAGM MILAINLIGG VCIGIFKYNL SADAAFQQYV 120
  121 LMTIGDGLVA QIPSLLLSTA AAIIVTRVSD NGDIAHDVRN QLLASPSVLY TATGIMFVLA 180
  181 VVPGMPHLPF LLFSALLGFT GWRMSKQPLA AEAEEKSLET LTRTITETSE QQVSWETIPL 240
  241 IEPISLSLGY KLVALVDKAQ GNPLTQRIRG VRQVISDGNG VLLPEIRIRE NFRLKPSQYA 300
  301 IFINGIKADE ADIPADKLMA LPSSETYGEI DGVQGNDPAY GMPVTWIQAA QKAKALNMGY 360
  361 QVIDSASVIA THVNKIVRSY IPDLFNYDDI TQLHNRLSST APRLAEDLSA ALNYSQLLKV 420
  421 YRALLTEGVS LRDIVTIATV LVASSTVTKD HILLAADVRL ALRRSITHPF VRKQELTVYT 480
  481 LNNELENLLT NVVNQAQQGG KVMLDSVPVD PNMLNQFQST MPQVKEQMKA AGKDPVLLVP 540
  541 PQLRPLLARY ARLFAPGLHV LSYNEVPDEL ELKIMGALM

Type	Start	End	Confidence
Cytoplasmic	1	86	0.96
Transmembrane Helix	87	108	0.92
Non-Cytoplasmic	109	126	0.86
Transmembrane Helix	127	148	0.88
Cytoplasmic	149	166	0.82
Transmembrane Helix	167	190	0.84
Non-Cytoplasmic	191	579	0.77